This collection includes theses, dissertations, and professional papers from the University of Montana Department of Computer Science. Theses, dissertations, and professional papers from all University of Montana departments and programs may be searched here.

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Theses/Dissertations from 2024

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SEQUENCE SIMILARITY SEARCH OPTIMIZATION: PREFILTERING STRATEGIES AND EXACT MATCHING TECHNIQUES FOR BIOLOGICAL SEQUENCE DATA, Tim Anderson

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Representing High-Fidelity Geospatial Data in Unreal Engine: Establishing a Foundation for Numerical Computation and Simulation in a Virtual Reality Environment, Hannah E. Gedlaman

Theses/Dissertations from 2023

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Assessing the Impact of Parallel Burnout Fires on Flank Rate of Spread, Erik Borke

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APPLICATIONS OF TRANSFER LEARNING FROM MALICIOUS TO VULNERABLE BINARIES, Sean Patrick McNulty

Theses/Dissertations from 2022

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A Machine Learning Algorithm Improves Surface Freeze-Thaw Classification, Fredrick Bunt

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LASSO: Listing All Subset Sums Obediently for Evaluating Unbounded Subset Sums, Christopher N. Burgoyne and Travis J. Wheeler

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A NON-DETERMINISTIC DEEP LEARNING BASED SURROGATE FOR ICE SHEET MODELING, Hannah Jordan

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FATHMM: Frameshift Aware Translated Hidden Markov Models, Genevieve Krause

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SENSITIVITY OF LIDAR DERIVED FUEL CELLS TO FIRE MODELING AT LABORATORY SCALE, Anthony Albert Marcozzi

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A Reynolds Number Based Sampling Technique for 3-D Vector Fields in Computational Fluid Dynamic Environments, Trent James Schweitzer

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SUBFAMILY CLUSTERING USING LABEL UNCERTAINTY (FOR TRANSPOSABLE ELEMENT FAMILIES), Audrey M. Shingleton

Theses/Dissertations from 2021

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POLYA: A TOOL FOR ADJUDICATING COMPETING ANNOTATIONS OF BIOLOGICAL SEQUENCES, Kaitlin Carey

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SUPER-RESOLUTION IMAGING OF REMOTE SENSED BRIGHTNESS TEMPERATURE USING A CONVOLUTIONAL NEURAL NETWORK, Kellen A. Donahue

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INFERENCE OF SURFACE VELOCITIES FROM OBLIQUE TIME LAPSE PHOTOS AND TERRESTRIAL BASED LIDAR AT THE HELHEIM GLACIER, Franklyn T. Dunbar II

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ENSEMBLE PROTEIN INFERENCE EVALUATION, Kyle Lee Lucke

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SPARSE FORWARD-BACKWARD ALIGNMENT FOR SENSITIVE DATABASE SEARCH WITH SMALL MEMORY AND TIME REQUIREMENTS, David H. Rich

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SODA: an Open-Source Library for Visualizing Biological Sequence Annotation, Jack W. Roddy and Travis J. Wheeler

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The Impacts of Integrating Interdisciplinary, Introductory Computer Science in High School Courses, Jan Roddy

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A Review and Evaluation of Techniques for Improved Feature Detection in Mass Spectrometry Data, Annika R. Tostengard and Rob Smith

Theses/Dissertations from 2020

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A Deep Learning Approach to Mapping Irrigation: U-Net IrrMapper, Thomas Henry Colligan IV

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Generating Peptide Mass Spectrometry Ground Truth Data, Jessica L. Henning and Rob Smith

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MODELING TWITTER SENTIMENT AS A FUNCTION OF PARTICULATE MATTER 2.5 FOR COMMUNITIES IMPACTED BY WILDFIRE ACROSS MONTANA AND IDAHO, Matthew Kelly

Theses/Dissertations from 2019

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Development of an Open-source, Custom Environmental Data Logger for Spatially Scalable Data Collection, Tim Anderson

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A DUAL STATE HIERARCHICAL ENSEMBLE KALMAN FILTER ALGORITHM, William J. Cook, Jesse Johnson, Marko Maneta, and Doug Brinkerhoff

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XFlow: An algorithm for extracting ion chromatograms, Mathew M. Gutierrez and Rob Smith

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ZERO-KNOWLEDGE DE NOVO ALGORITHMS FOR ANALYZING SMALL MOLECULES USING MASS SPECTROMETRY, Patrick Anthony Kreitzberg

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OPTIMIZATION OF SIMULATIONS IN OPENSIMPPLLE, Robin Lockwood

Theses/Dissertations from 2018

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Quantifying effects of using thermally thin fuel approximations on modelling fire propagation in woody fuels, David Blasen, Jesse Johnson, William Jolly, and Russell Parsons

Theses/Dissertations from 2017

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XIC Clustering By Baseyian Network, Kyle J. Handy

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K-MER ANALYSIS PIPELINE FOR CLASSIFICATION OF DNA SEQUENCES FROM METAGENOMIC SAMPLES, Russell Kaehler

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Mirage: A Novel Multiple Protein Sequence Alignment Tool, Alex Nord

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EXPLORING POPULATION CHANGE DETECTION BY MONITORING EFFECTIVE NUMBER OF BREEDERS, Brian Trethewey

Theses/Dissertations from 2016

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MODELING THE CRYOSPHERE WITH FEniCS, Evan M. Cummings

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Hydraulic Conductivity as a Proxy for Drainage System Connectivity in a Subglacial Hydrology Model, Jacob Z. Downs

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ChilliSource Game Engine Particle System Study, Angela Gross

Theses/Dissertations from 2015

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INVESTIGATING THE IMPACT OF USING MOODLE AS AN E-LEARNING TOOL FOR STUDENTS IN AN ENGLISH LANGUAGE INSTITUTE, Nada I. Alhothli

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An Adventurous E-Reader for Non-Linear E-Books, Emily Palmieri

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A Case Study Tested Framework for Multivariate Analyses of Microbiomes: Software for Microbial Community Comparisons, Eric M. Spaulding

Theses/Dissertations from 2014

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An Adaptive Hybrid Method for Link Prediction in Multi-Modal Directed Complex Networks Using the Graph Traversal Pattern, William Lyon

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INTRODUCTION TO PARALLEL COMPUTATION, Clinton McKay

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Greenland Subglacial Hydrology Model, Meghan K. Oswalt

Theses/Dissertations from 2013

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Variational Methods in Ice Sheet Modelling, Douglas John Brinkerhoff

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IMPLEMENTATION OF A VERTICALLY INTEGRATED ICE SHEET MOMENTUM BALANCE MODEL, Joshua Charles Campbell

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An Investigation of Viscosity Using Measured Velocities on Helheim Glacier, Glen David Granzow

Theses/Dissertations from 2012

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CLASSIFYING EMOTION USING STREAMING OF PHYSIOLOGICAL CORRELATES OF EMOTION, Nathan J. Elmore

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Functional Encryption as Mediated Obfuscation, Robert Perry Hooker

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MEASURING AND QUANTIFYING WEB APPLICATION DESIGN, Craig A. McNinch

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Simplifying the Campus Experience through Mobility, Corrine Erin Olson

Theses/Dissertations from 2011

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Pedestrian Pal: A Route Recommendation System for the Android Mobile Phone, Bradley H. Bahls

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Real-Time Smoothed Particle Hydrodynamics For CUDA, steven santos garcia

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AN EQUIVALENT CLASS SOLUTION FOR A COMPLETE TEST OF A PARALLEL PROGRAM, Peter Michael Wolf

Theses/Dissertations from 2009

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Integration of Higher-Order Physics in the Community Ice Sheet Model: Scientific and Software Concerns, Timothy Joseph Bocek

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Implementation of a Web Application for Testing Memory Retrieval Through the Development and Utilization of Customizable Exams, Kevin Shea O'Reilly

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Testing the effect of varying environments on the speed of evolution, Zhongmiao Xiao

Theses/Dissertations from 2008

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Development of a Higher-Order Ice Sheet Model Using a Rescaled Coordinate System, James Fishbaugh

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TESTING xUML: A STUDY OF IMPLEMENTING AND TESTING MODEL DRIVEN ARCHITECTURE, Dylan O. Flaherty

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COST ANALYSIS OF REQUIREMENTS, DESIGN, AND CODE REVIEWS AND HOW THIS IMPACTS THE COST OF QUALITY, Mark W. Huston

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Implementation of an XML-based user interface with applications in ice sheet modeling, Daniel Ross Lande

Theses/Dissertations from 2007

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The Creation of Cargo Scanner Software to Improve the Container Packing Process, Jonathan Adams

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Comparison of Strategies for the Constraint Determination of Simulink Models, Charles Joseph Alex

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ProjectSnap: Addressing the Project Fragmentation Problem, Erin Michael Brimhall

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A User Study on 2D Wind Visualization Methods, Chen Cao

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DEVELOPING ELECTRONIC PORTFOLIO SOFTWARE FOR PROGRAM ASSESSMENT, Melissa Elizabeth Holmes

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XP PROJECT MANAGEMENT, Craig William Macholz

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THE EFFECT OF ORIENTATION-NEUTRAL CURSORS ON MOVEMENT TIME, POSITIONING PERFORMANCE, AND STIMULUS-RESPONSE (S-R) COMPATIBILITY, Kim Joachim Oehmichen

Theses/Dissertations from 2006

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Range analysis of variables within a program, Yuanzhen Bao

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Modeling and visualization of automated feature extraction workflows, Scott W. Bouma

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Allometric scaling in river basin models, Ted F. Cosart

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The use of a discrete element granular material model to investigate jamming in glacial fjords, Jared Douglas Rapp

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A general and age-dependent physiological based pharmacokinetic (PBPK) model development, Xianping Tong

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THE DEVELOPMENT OF THE WEB BASED CO2SYS PROGRAM, Shigui Yuan

Theses/Dissertations from 2005

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Channel networks in ice: Application of river network research to ice streams, Jeremy Carter Mason

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Transparent Line Integral Convolution: A new approach for visualizing vector fields in OpenDX, Alexander Petrov Petkov

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An estimation of distribution algorithm based on linkage discovery and factorization, S. V. Pulavarty

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Weather modeling, Swarna Pulavarty

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Numerical experiments in geostrophic turbulence using the finite element method, Jeremy Allen Sauer

Theses/Dissertations from 2004

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Software system for mining spatio-temporal association rules, Abraham N. Konda

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Design and implementation of Smoke Management GIS system using data transformaiton services, Web services, and ArcObjects programming, Haiying Liang

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Crossover helps genetic algorithms in non-stationary environment, Yi Long

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Breeder algorithm for stellarator optimization, Shengping Wang

Theses/Dissertations from 2003

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Online Instruction Collaboration Project, Michael David Cassens

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Software system for spatio-temporal prediction and analysis, Chellam Balasundaram Chellam

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Bistability of the needle function in the presence of truncation selection, Greg Cripe

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Parallel Genetic Ensemble Feature Selection, Navin Elango

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Assessment and evaluation of computer science education, Jennifer R. Parham

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Using Visual Basic & ArcObjects to create ActiveX controls for MAGIS-Express Import Wizard, Li Mei Piao

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Genetic programming approach to geospatial data mining, Supat Rattanasuksun

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Object-oriented design and implementation of the genetic ensemble feature selection method., Lee Stuart Slater

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Adaptive feature extraction: Exploring the search space with change detection using inductive learners and image processing, Joseph D. Zeiler

Theses/Dissertations from 2002

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Introduction to Web programming with SAS AppDev Studio TM, Frederick E. Pratter

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Investigation of an Oracle application's high-level design, Scott W. Schield

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Analysis of problem representation in the application of artificial neural networks for feature classification in imagery, Michael D. Sweet

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Porting MATT from MatrixX to MATLAB, Jing Tao

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Software development as applied to Java Create Report project, Giap Thai

Theses/Dissertations from 2001

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Computer database security and Oracle security implementation, Mei Ke

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Implementation of parallel-distributed computation under load balancing and fault tolerance, Gang Wu

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Design and implementation of a web server application for students to submit assignments, Yuehua Yang

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Model-based path testing, Jie Zhang

Theses/Dissertations from 2000

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Comparison of three machine learning algorithms for automated feature extraction from digital images, William D. Bain

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A computerized tool for the collection and manipulation of physical therapy outcomes data, Doug Lawrence